roary-pangenome
@jaechang-hits · 收录于 1 周前
Compute the bacterial pan-genome from Prokka/Bakta GFF3 annotations with Roary's CD-HIT + BLAST + MCL clustering pipeline. Builds gene presence/absence matrices, core/soft-core/shell/cloud partitions, multi-FASTA core gene alignments (with `-e`), and a pan-genome reference. Use Panaroo for higher-accuracy pan-genomes from highly fragmented assemblies, PIRATE for paralog-aware clustering, or PPanGGOLiN for graph-based partitioning.
适合你，如果正在分析细菌基因组并需要构建核心与附属基因集。
/ 通过 npx 安装 校验哈希
npx oh-my-skill add jaechang-hits/sciagent-skills/roary-pangenome/ 通过 bash 安装
curl -fsSL https://oh-my-skill.com/install.sh | bash -s -- jaechang-hits/sciagent-skills/roary-pangenome/ 已经装过?验证本机副本,不用重装
npx oh-my-skill verify jaechang-hits/sciagent-skills/roary-pangenome安装目标可用 --agent / --scope 或 --to 明确指定;省略时只会在唯一已存在的 agent 目录上自动选择,零命中或多命中会停止并提示。content_hash 缺失或不一致均拒装。
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