bioinformatics-installer

@ammawla · 收录于 1 周前

Install bioinformatics tools for ENCODE data analysis. Covers CLI tools (BWA, STAR, samtools, MACS2), R/Bioconductor packages (DESeq2, Seurat, ChIPseeker), Python packages (Scanpy, deeptools), and Nextflow pipeline infrastructure. Generates conda environments, R install scripts, and Python requirements. Use when the user needs to set up a bioinformatics workstation, install tools for a specific assay, create reproducible environments, or troubleshoot dependency issues. Trigger on: install tools, set up environment, conda create, bioinformatics setup, install R packages, install Bioconductor, install pipeline tools.

场景生信环境搭建工具安装依赖管理

适合你，如果需要快速配置生物信息学分析工作站或可复现环境

/ 下载安装

https://github.com/ammawla/encode-toolkit/tree/main/plugin/skills/bioinformatics-installer ↗

/ 通过 npx 安装 校验哈希

npx oh-my-skill add ammawla/encode-toolkit/bioinformatics-installer

/ 通过 bash 安装

curl -fsSL https://oh-my-skill.com/install.sh | bash -s -- ammawla/encode-toolkit/bioinformatics-installer

/ 已经装过?验证本机副本,不用重装

npx oh-my-skill verify ammawla/encode-toolkit/bioinformatics-installer

安装目标可用 --agent / --scope 或 --to 明确指定;省略时只会在唯一已存在的 agent 目录上自动选择,零命中或多命中会停止并提示。content_hash 缺失或不一致均拒装。

37GitHub stars

~6.6K最小装载

~8.9K含声明引用

~10.8K文本包总量

索引托管

登录即可评论;带「已验证安装」的,是发布者名下有本店的安装或持有记录。

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