peak-annotation

@ammawla · 收录于 1 周前

Guide for annotating ENCODE peaks with genomic features using ChIPseeker and GREAT. Use when users need to assign peaks to genes, determine genomic feature distribution (promoter, intron, intergenic), or perform gene ontology enrichment of peak-associated genes. Trigger on: peak annotation, ChIPseeker, GREAT, peak to gene, genomic feature, promoter enrichment, gene ontology, peak distribution, TSS distance, nearest gene.

场景峰图注释基因功能分析

适合你，如果正在分析ENCODE峰图数据，需要将峰分配到基因并做GO富集

/ 下载安装

https://github.com/ammawla/encode-toolkit/tree/main/plugin/skills/peak-annotation ↗

/ 通过 npx 安装 校验哈希

npx oh-my-skill add ammawla/encode-toolkit/peak-annotation

/ 通过 bash 安装

curl -fsSL https://oh-my-skill.com/install.sh | bash -s -- ammawla/encode-toolkit/peak-annotation

/ 已经装过?验证本机副本,不用重装

npx oh-my-skill verify ammawla/encode-toolkit/peak-annotation

安装目标可用 --agent / --scope 或 --to 明确指定;省略时只会在唯一已存在的 agent 目录上自动选择,零命中或多命中会停止并提示。content_hash 缺失或不一致均拒装。

37GitHub stars

~4.1K最小装载

~4.1K含声明引用

~6.4K文本包总量

索引托管

登录即可评论;带「已验证安装」的,是发布者名下有本店的安装或持有记录。

…