pipeline-wgbs

@ammawla · 收录于 1 周前

Execute ENCODE Whole Genome Bisulfite Sequencing (WGBS) pipeline from FASTQ to methylation calls. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing WGBS/bisulfite-seq data, calling methylation levels, generating bedMethyl files. Trigger on: WGBS pipeline, bisulfite sequencing, methylation calling, DNA methylation pipeline, bismark, bwa-meth, bedMethyl.

适合你，如果处理WGBS或重亚硫酸盐测序数据并需要标准化流程

/ 下载安装

https://github.com/ammawla/encode-toolkit/tree/main/plugin/skills/pipeline-wgbs ↗

/ 通过 npx 安装 校验哈希

npx oh-my-skill add ammawla/encode-toolkit/pipeline-wgbs

/ 通过 bash 安装

curl -fsSL https://oh-my-skill.com/install.sh | bash -s -- ammawla/encode-toolkit/pipeline-wgbs

/ 已经装过?验证本机副本,不用重装

npx oh-my-skill verify ammawla/encode-toolkit/pipeline-wgbs

安装目标可用 --agent / --scope 或 --to 明确指定;省略时只会在唯一已存在的 agent 目录上自动选择,零命中或多命中会停止并提示。content_hash 缺失或不一致均拒装。

37GitHub stars

~2.8K最小装载

~2.8K含声明引用

~8.6K文本包总量

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